Worksheet 4.3 - Mapping reads using HISAT2 Authors: Mary Allen & Daniel Ramirez HISAT2 manual: https://ccb.jhu.edu/software
RNAseq analyses workflow to find differentially expressed genes
![wiki:hisat2build [Computational biology at CSU]](https://rna.colostate.edu/2020/lib/exe/fetch.php?w=600&tok=3f7798&media=wiki:screen_shot_2018-11-15_at_3.49.44_am.png "wiki:hisat2build [Computational biology at CSU]")
wiki:hisat2build [Computational biology at CSU]
hisat2-stringtie_wf_se.cwl - Common Workflow Language Viewer
Manual | HISAT2
Manual
Worksheet 4.3 - Mapping reads using HISAT2 Authors: Mary Allen & Daniel Ramirez HISAT2 manual: https://ccb.jhu.edu/software
Compile and Software installation (II) – BCH709 Introduction to Bioinformatics
Getting started with HISAT, StringTie, and Ballgown - Dave Tang's blog
Manually curated and harmonised transcriptomics datasets of psoriasis and atopic dermatitis patients | Scientific Data
Manual | HISAT2
hisat2-stringtie_wf_se.cwl - Common Workflow Language Viewer
User manual | DEWE
Worksheet 4.3 - Mapping reads using HISAT2 Authors: Mary Allen & Daniel Ramirez HISAT2 manual: https://ccb.jhu.edu/software
Manual | HISAT2
Mapping with HISAT2 - Bioinformatics Team (BioITeam) at the University of Texas - UT Austin Wikis
Directional/stranded RNA-seq data -which parameters to choose?
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown | Nature Protocols
Alignment | Griffith Lab
User manual | DEWE
Expression | Griffith Lab
e-Learning: Practical Transcriptomics Food-ENG-F1000
Bioinformatics Analysis of Omics Data with the Shell & R | R-bloggers
